Learning Objectives

Learn the basics of Shiny Apps.
Chapters 1 through 3 of Mastering Shiny.
- Most content discretely stolen from Hadley’s book.
Shiny Cheatsheet.
Optional Resources

Motivation

As a data scientist, you will collaborate with researchers / managers / customers who do not know R.
You either want them to explore the data themselves, or you want to interactively explore the data together.
Shiny lets you build an app that will run R using a graphical user interface. You write shiny apps in R.
Folks showcase some pretty sophisticated interactive data visualizations: https://shiny.rstudio.com/gallery/.
This can all be accomplished without learning HTML, CSS, or JavaScript.

Format of a Shiny App.

All code for shiny apps lives in a file called “app.R”.

The format of every app.R file looks like this:

library(shiny)

# Define UI for application
ui <- fluidPage(
    ## Stuff for defining user-interface
    ## e.g. Title,
    ##      Table of contents
    ##      Location of inputs (sliders and buttons)
)

# Define server logic
server <- function(input, output) {
    ## Stuff for running R code
    ## e.g. Run a linear model.
    ##      Manipulate a data frame
    ##      Make a plot.
}

# Run the application
shinyApp(ui = ui, server = server)

The elements of this file are:
1. We first load the shiny library.
2. Then we define the user interface using the fluidPage() function. We save the output of this function to some variable (called ui above).
  - The user interface defines things like page layout (title, headers, table of contents), and sources of input (number sliders and buttons)
3. Then we define the server function which will run R code using the input you obtain from the user interface.
  - This is just regular R code wrapped in some special Shiny functions. You can manipulate data frames, fit statistical models, or make plots.
4. Finally, we call the shinyApp() function, telling it what objects we defined as the user interface and the server function.

Your First Shiny App

You can create a basic Shiny app by clicking “Shiny Web App…”:
A prompt will begin asking for the application name. The name needs to follow the conventions of variable naming and will create a new directory in the directory that you specify. Let’s call our shiny app “my_first_app”.

R Studio provides a nice template which should look like this:

#
# This is a Shiny web application. You can run the application by clicking
# the 'Run App' button above.
#
# Find out more about building applications with Shiny here:
#
#    http://shiny.rstudio.com/
#

library(shiny)

# Define UI for application that draws a histogram
ui <- fluidPage(

    # Application title
    titlePanel("Old Faithful Geyser Data"),

    # Sidebar with a slider input for number of bins 
    sidebarLayout(
        sidebarPanel(
            sliderInput("bins",
                        "Number of bins:",
                        min = 1,
                        max = 50,
                        value = 30)
        ),

        # Show a plot of the generated distribution
        mainPanel(
           plotOutput("distPlot")
        )
    )
)

# Define server logic required to draw a histogram
server <- function(input, output) {

    output$distPlot <- renderPlot({
        # generate bins based on input$bins from ui.R
        x    <- faithful[, 2]
        bins <- seq(min(x), max(x), length.out = input$bins + 1)

        # draw the histogram with the specified number of bins
        hist(x, breaks = bins, col = 'darkgray', border = 'white')
    })
}

# Run the application 
shinyApp(ui = ui, server = server)

With this app.R file open, click on “Run App” at the top right of your text panel.
Notice that your console is busy. You cannot run R code in the console while the Shiny App is running.
It should say something like “Listening on http://127.0.0.1:4489”, but the url will be different. You can put that URL into your web browser and see the running Shiny App.
- Don’t worry, it’s still on your computer. The URL just points to a location on your machine.
Exit out of the Shiny App by
1. Clicking the stop sign on your console.
2. Hitting CTRL + C while you are in the console.
3. Closing the Shiny App window.

Input UI Elements

In this section we’ll describe how to format the user interface. This is the stuff that goes within the fluidPage() call.

To do this, start up a new app called “tryouts” and make it bare-bones:

library(shiny)

ui <- fluidPage(

)

server <- function(input, output, session) {

}

shinyApp(ui, server)

The above code “snippet” will we be populated if you start typing “shinyapp” in R Studio and select it from the auto-complete list.
I would recommend using the above as a template for all future Shiny apps. It is the minimal amount of coded needed to start a Shiny app.
Running this app should just produce a blank HTML page.
You place function calls within fluidPage(), with each call separated by a comma.
The most basic arguments are calls for input functions, such as sliderInput(), selectInput(), textInput(), and numericInput().
Each of these input calls take at least three arguments:
- inputId: The name of the input. The server() function will access user inputs through inputId, so it needs to follow the conventions of variable naming.
- label: The name displayed on the web-app to the user.
- value: A default input.
Each input function will also take many more arguments specific to that type of input.

Text Inputs

Use textInput() to collect one line of text.
Use passwordInput() to collect one line of text which is not displayed on the screen as it is entered.
- NOTE: This is not a secure way to collect passwords by itself.
UsetextAreaInput() to collect multiple lines of text.

Add this element to your tryouts app:

library(shiny)    

ui <- fluidPage(
  textInput("name", "What's your name?"),
  passwordInput("password", "What's your password?"),
  textAreaInput("story", "Tell me about yourself")
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Later on, we’ll demonstrate how to access these inputs in the server() function.
Exercise: Change the width and height arguments in textAreaInput(). What does it do?
Exercise: Change the value argument in textInput(). What does it do?

Numeric Inputs

Use numericInput() to create a text box that only accepts numeric values.

Use sliderInput() to create a number slider.

Giving the value argument one number will result in a one-sided slider.
Giving the value argument a vector of two numbers will result in a two-sided slider.

library(shiny)

ui <- fluidPage(
  numericInput("num", "Number one", value = 0, min = 0, max = 100),
  sliderInput("num2", "Number two", value = 50, min = 0, max = 100),
  sliderInput("rng", "Range", value = c(10, 20), min = 0, max = 100)
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Only use sliders for small ranges where the exact number is not important.
Exercise: What does the animate option do when you set it to TRUE?
You can see more on sliders at https://shiny.rstudio.com/articles/sliders.html.

Date Inputs

Use dateInput() to collect a single date.

Use dateRangeInput() to collect two dates.

library(shiny)

ui <- fluidPage(
  dateInput("dob", "When were you born?"),
  dateRangeInput("holiday", "When do you want to go on vacation next?")
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: In dateInput(), try to disable the selection of Sundays, Mondays, Fridays, and Saturdays.

Multiple Choice

Use selectInput() to provide the user with a drop-down menu.
Use radioButtons() to have a multiple choice button selection where only selection is possible.

Use checkboxGroupInput() to have a multiple choice button selection where multiple selections are possible.

library(shiny)

weekdays <- c("Sun", "Mon", "Tue", "Wed", "Thu", "Fri", "Sat")
ui <- fluidPage(
  selectInput("state", "Where do you live?", choices = state.name),
  radioButtons("weekday", "What's your favorite day of the week?", choices = weekdays),
  checkboxGroupInput("weekday2", "What days do you work?", choices = weekdays)
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: What does multiple = TRUE do in in selectInput()?

Columns of a Data Frame

For a data frame named df, just use selectInput(), with the choices = names(df) option.

library(shiny)

ui <- fluidPage(
  selectInput("carcol", "Which Column?", choices = names(mtcars))
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: What does the selected argument do? Change it.

Binary Inputs

Use checkboxInput() to get a TRUE/FALSE or Yes/No answer.

library(shiny)

ui <- fluidPage(
  checkboxInput("startrek", "Like Star Trek?")
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: What are the possible values for the value argument? Change it.

It can be either TRUE (so the box is checked) or FALSE (so the box is unchecked).

File Inputs

Use fileInput() to have a user input a file name.
Running the app, you should get something like this:
Exercise: What does the buttonLabel argument do? Change it.

Action Buttons

Use actionButton() to create a clickable button, or actionLink() to create a clickable link.

library(shiny)

ui <- fluidPage(
  actionButton("click", "Click me!"),
  actionLink("Link", "No, click me!")
)

server <- function(input, output) {

}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:

Output UI Elements

Output functions are placeholders for things created in the server() function (like plots and tables).
Each output function has a label as its first argument. The server() can access this element as an element of the output list.
- For example, if the label is "plot", then the server function can insert a plot into output$plot.
Each output function in the UI is associated with a render function in the servor().
- A render function basically creates HTML code given an expression.
- An expression is just R code surrounded by curly braces {}.

Text Output

Use textOutput() to display text.
Use verbatimTextOutput() to display code.
You create text in the server() function by either renderText() or renderPrint().
renderText() will display text returned by code. Functions can only return one thing.

renderPrint() will display text printed by code. Functions can print multiple things.

library(shiny)

ui <- fluidPage(
  textOutput("text"),
  verbatimTextOutput("code")
)

server <- function(input, output, session) {
  output$text <- renderText({
    "Hello World!"
  })

  output$code <- renderPrint({
    summary(c(1, 2, 3, 4))
  })
}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: Change the label from “text” to something else. Make sure the Shiny App still works.

Output Tables

Use tableOutput() to print an entire table created in the server by renderTable().

Should only be used for small tables.

library(shiny)

ui <- fluidPage(
  tableOutput("static")
)

server <- function(input, output, session) {
  output$static <- renderTable({
    head(mtcars)
    })
}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:

Use dataTableOutput() to output a dynamic table created in the server by renderDataTable().

library(shiny)

ui <- fluidPage(
  dataTableOutput("dynamic")
)

server <- function(input, output, session) {
  output$dynamic <- renderDataTable({
    mtcars
    })
}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
You can change the appearance of dataTableOutput() by passing arguments as a list to the options argument in renderDataTable().
- You can find these options at: https://datatables.net/reference/option/
```
renderDataTable({ mtcars }, options = list(pageLength = 5))
```

Output Plots

Use plotOutput() to output plots created by renderPlot() in the server() function.

library(shiny)
library(ggplot2)

ui <- fluidPage(
  plotOutput("plot")
)

server <- function(input, output, session) {
  output$plot <- renderPlot({
    ggplot(mpg, aes(x = displ, y = hwy)) +
      geom_point() +
      theme_bw() +
      xlab("Displacement") +
      ylab("Highway MPG")
    })
}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
Exercise: Change the height and width of the plot by changing the argument values in renderPlot().
Exercise: Change the height and width of the plot by changing the argument values in plotOutput().

`ggplot2` and non-standard evaluation

Why won’t the following code work?

data("mtcars")
myvariable <- "mpg"
ggplot(mtcars, aes(x = myvariable)) +
  geom_histogram()

What we are trying to do is make a histogram of mpg. But what ggplot2 things we want to do is make a histogram of myvariable. But there is not variable called myvariable in the mtcars data frame!
That is, ggplot2 does not know that myvariable has as a value "mpg". It just looks for a variable literally called “myvariable”.
This is called non-standard evaluation, where we don’t use the value of a variable ("mpg"), but we use the variable name itself (myvariable).
This “data masking” is useful because you don’t need quotes around everything, but it makes writing shiny apps (letting a user choose a variable to plot) a little more difficult.

To overcome this, use the .data object that you subset using myvariable and double brackets [[]].

data("mtcars")
myvariable <- "mpg"
ggplot(mtcars, aes(x = .data[[myvariable]])) +
  geom_histogram()

In Shiny, you only need to use the .data object when interacting with a variable in the tidyverse functions (e.g. mutate(), filter(), summarize(), ggplot(), etc…).

Putting Inputs and Outputs Together

Let’s build a very simple shiny app that let’s the user choose two variables from mtcars and then plots them.

library(shiny)
library(ggplot2)

ui <- fluidPage(
    selectInput("var1", "Variable 1", choices = names(mtcars)),
    selectInput("var2", "Variable 2", choices = names(mtcars)),
    plotOutput("plot")
)

server <- function(input, output) {
    output$plot <- renderPlot({
        ggplot(mtcars, aes(x = .data[[input$var1]], y = .data[[input$var2]])) +
            geom_point()
    })
}

shinyApp(ui = ui, server = server)

Running the app, you should get something like this:
In the server() function, notice that we accessed the inputs via the input variable.
- These inputs must be used inside a render function in order to obtain reactivity.
In the server() function, notice that we set the outputs to the output() variable.
Notice that I used the .data, subsetted using input$var1 and input$var2. You have to do this to use variable names in the tidyverse (ggplot, dplyr, tidyr, etc).
Exercise: Let the user choose whether they want red points or blue points.
Exercise: Create a shiny app that will plot a histogram of the the variable of the user’s choosing from mtcars. The user should also be able to select (i) the number of bins, (ii) the fill color of the bins (either "red" or "black") and (iii) the theme of the plot (either theme_bw() or theme_dark()).

Alternative pipeline to `.data`

You can use selectInput() for variable selection, in which case you can use the .data object.

But if you use varSelectInput(), you need to use !!.

library(shiny)
library(ggplot2)

ui <- fluidPage(
    varSelectInput("var1", "Variable 1", data = mtcars),
    varSelectInput("var2", "Variable 2", data = mtcars),
    plotOutput("plot")
)

server <- function(input, output) {
    output$plot <- renderPlot({
        ggplot(mtcars, aes(x = !!input$var1, y = !!input$var2)) +
            geom_point()
    })
}

shinyApp(ui = ui, server = server)

Compare UI:
- Way 1: varSelectInput("var1", "Variable 1", data = mtcars)
- Way 2: selectInput("var1", "Variable 1", choices = names(mtcars))
Compare Server:
- Way 1: x = !!input$var1
- Way 2: x = .data[[input$var1]]
Exercise: Create a Shiny app that will take as input
1. A column from mtcars
2. A numeric value
and it will print out an interactive table containing just the rows from mtcars that have a value of the selected variable above the provided numeric value. For example, if the user selects mpg as the column and 30 as the numeric value, then the code that would effectively be run would be:
```
mtcars |>
  filter(mpg > 30)
```

The Basics of Shiny Apps

David Gerard

2023-12-04

Learning Objectives

Motivation

Format of a Shiny App.

Your First Shiny App

Input UI Elements

Text Inputs

Numeric Inputs

Date Inputs

Multiple Choice

Columns of a Data Frame

Binary Inputs

File Inputs

Action Buttons

Output UI Elements

Text Output

Output Tables

Output Plots

`ggplot2` and non-standard evaluation

Putting Inputs and Outputs Together

Alternative pipeline to `.data`

The Basics of Shiny Apps

David Gerard

2023-12-04

Learning Objectives

Motivation

Format of a Shiny App.

Your First Shiny App

Input UI Elements

Text Inputs

Numeric Inputs

Date Inputs

Multiple Choice

Columns of a Data Frame

Binary Inputs

File Inputs

Action Buttons

Output UI Elements

Text Output

Output Tables

Output Plots

ggplot2 and non-standard evaluation

Putting Inputs and Outputs Together

Alternative pipeline to .data

`ggplot2` and non-standard evaluation

Alternative pipeline to `.data`